Medical Merchant Account Services for Healthcare Providers

The medical industry has grown by leaps and bounds in the last few decades. With advances in nearly all fields of medicine, the medical industry has continued to look towards digital solutions for many of their problems. Not only does science relies on technology, but many of the ways medical offices and healthcare provider accept payments has also become digital. The demand for medical merchant account solutions, including dentist credit card processing, has risen dramatically in the last decade as technology has made it a more reliable and better payment option.

The costs for healthcare organizations are astounding when physicians reveal overhead is nearly 40% today.  As hospitals consolidate and patient databases grow, the need for healthcare providers to affordably manage their customers remains of utmost importance. Advances in technology have established online databases allowing healthcare providers to securely store customer information and share as needed. This shift towards a paperless society has also been seen in the way people make payments.


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Healthcare Payment Processing Solutions

medical merchant account services

As insurance has become costly and complicated for the medical industry, physicians have preferred to accept payments.  During the same time, the use of credit cards and debit cards by consumers has continued to grow year over year. In response, the use by healthcare providers of payment processing through bank cards or echecks has also risen. Seeing medical offices with either a credit card machine or card swiper integrated into a payment gateway has become the norm.

The use of payment cards is one of the most convenient ways for customers to pay and merchants to manage funds. Payments sent through a payment gateway are easily stored for future reporting and accounting purposes.  This makes the financial management of credit and debit card transactions much easier than cash payments. Payment cards are not the only simplified payment method, echecks have also become more widely accepted.

With many of the changes to the banking industry in the early 2000s, the use of echecks has steadily taken off.  Merchants can easily accept a one-time payment or initiate a monthly billing profile for customers. Fees for echeck payments are generally much lower than that of credit or debit cards but have a slightly longer settlement period.

Depending on the needs of the medical office or healthcare provider, adding medical credit card processing or healthcare echeck processing services can be beneficial.

Medical Office Credit Card Processing Fees

There are a number of ways that merchant accounts can be priced. Depending on the payment processor and the fee structures used, the fees charged to merchants can vary dramatically.  This is one of the most confusing, and important, pieces of the processing contract for merchants to understand before agreeing.

credit card processing for medical officesFees associated with a merchant account can be numerous and become very costly.  Including everything from the discount fee charged by Visa, MasterCard, Discover, and American Express to other account fees, the costs of a payment card fluctuate dramatically. Understanding the different fees can help healthcare physicians find the lowest cost medical merchant account solution.

The fees surround each transaction are some of the highest costs charged to an account on a monthly basis.  Fees are charged as either a discount fee, transaction fee or both. Some merchant accounts will not charge fees but for the vast majority of merchant processors, they will.

Transaction fees will normally only be assessed per occurrence, depending on the volume of transactions this can be costly or nothing of real concern. Discount fees, the ones that take a percentage of the sale, are widely viewed as the most expensive and troublesome cost to the merchant.

Discount fees can be charged to merchants through a number of ways.  The most commonly used fee structures today include Tiered Pricing, Interchange-Plus Pricing, Blended Pricing or Flat Fee pricing.

Tiered Pricing
One of the original and most popular pricing models used in the industry. Merchants were set up with a number of different tiers, known as qualified, mid-qualified and non-qualified. When a payment card was authorized, the payment processor prices the transaction according the lowest cost fee the card can be approved for. This has become a somewhat antiquated pricing structure due to its high costs, especially as debit cards continue expanding in usage.

Interchange-Plus Pricing
For most merchants, the interchange plus structure is the lowest cost way to accept payments. Pass through fees from the card association is charged to the merchant plus a small assessment charged by the merchant acquirer. While merchants might have difficulty in knowing the exact fees being charged by their customer’s bank, they will know the fees of their payment processor. This simplified pricing structure allows for the lowest possible costs for every card to be realized by the merchant.

Blended Pricing
Offered by many of the eWallet and online payment processing services, blended pricing has become extremely favorable with startup merchants. Payment processors charge merchants a flat fee for every transaction, regardless if its a debit or credit card. With less fixed monthly fees every month, merchants will know the exact fees being charged on every transaction.

Flat Rate
This type of pricing structure allows merchants to pay a monthly membership fee to process their transactions. Payment processors offering this type of fee structure will assess a set fee per month based on the number or volume of transactions. Merchants opting for a flat fee merchant account will have peace of mind every month. Knowing exactly what their payment processor will assess them for fees can help merchants plan without any surprises.

Learning about the various types of pricing structures can help merchants find the best solution for their business. The Interchange Plus, Blending or Flat Rate could be beneficial to a business depending on their size and types of transactions. As for tiered pricing, we can unequivocally say that this is a much costlier solution for all types of businesses. Consulting a payment professional can help merchants determine what their options are and the best solution for the business’ needs.


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Physicians and Healthcare offices searching for more information about medical merchant account services are encouraged to contact our payment processing department. Whether prospective merchants need questions answered or a rate quote, our team of credit card processing professionals are happy to help.

 

Frequently Asked Questions (FAQ)

What is a medical merchant account?

A medical merchant account is a specialized type of payment processing account designed for healthcare providers and medical-related businesses. It allows clinics, private practices, labs, and other healthcare providers to accept debit and credit card payments securely and in compliance with industry standards.

Medical businesses often face stricter compliance and higher risk classifications due to regulations like HIPAA and the nature of services provided. A specialized medical merchant account ensures you can accept payments legally, securely, and reliably with processors that understand the unique challenges of the healthcare industry.

Our medical merchant account services support a wide range of healthcare professionals and facilities, including but not limited to:

  • General practitioners and specialists
  • Chiropractors and physical therapists
  • Medical labs and diagnostic centers
  • Mental health professionals and counselors
  • Dental and orthodontic clinics
  • Home healthcare and medical equipment suppliers

Yes, many medical-related businesses are classified as high-risk due to regulatory oversight, potential for chargebacks, or recurring billing models. AlliedPay specializes in high-risk payment processing, offering stable and secure merchant solutions tailored to the medical field.

Look for key features such as:

  • HIPAA-compliant payment systems
  • Secure online and in-person payment options
  • Recurring billing for patient subscriptions
  • Fast approval process for high-risk merchants
  • Chargeback management tools
  • 24/7 support for transaction or account issues

Yes, AlliedPay supports HSA (Health Savings Account) and FSA (Flexible Spending Account) card payments, making it easier for patients to use pre-tax dollars for qualifying medical services.

Approval times vary depending on your business type, history, and documentation provided. Most medical businesses can get approved within 24 to 72 hours once all required paperwork is submitted.

Absolutely. AlliedPay prioritizes security and confidentiality. Our systems and processes are designed to meet HIPAA standards, ensuring the protection of your patients’ sensitive payment data.

Yes, AlliedPay’s medical merchant services are designed to integrate seamlessly with most EMR/EHR systems, practice management software, and online billing tools to streamline operations and reduce administrative burden.

Getting started is simple. Visit our Medical Merchant Account Services page, fill out the quick application form, and one of our specialists will guide you through setup, integration, and approval.

 


 

Allied Payments place picture
4.5
Based on 13 reviews
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Oduman Hookah profile picture
Oduman Hookah
4 months ago
Very good service, we are happy to work with this company.
Emanuel Petrescu profile picture
Emanuel Petrescu
5 months ago
Great customer service and always there to help and assist, answer questions and provide guidance.
Equus Escapes profile picture
Equus Escapes
7 months ago
I’ve had an excellent experience working with this merchant services company. Going into the process, I knew very little about what I needed for my business, and they made everything clear and easy to understand. Charles and Cris, who I’ve worked with most, have been fantastic, professional, knowledgeable, and genuinely helpful throughout the entire setup.

They’re a well-run, trustworthy company, and every time I’ve reached out with a question, they’ve been thorough and thoughtful in their responses. You can tell they truly care about supporting their clients.

Our business is often considered “high-risk” by many processors, so finding the right partner can be challenging. These guys made the whole experience smooth, and I feel very confident working with them.

If you’re a business owner looking for a solid, reliable merchant services provider—especially if your needs are a bit more specialized. I highly recommend them.
Har Har Maha Dave profile picture
Har Har Maha Dave
10 months ago
Photo from customer review
Highly Recommended for High Risk Merchant Account Services!
Shane Darvish profile picture
Shane Darvish
11 months ago
I was fortunate enough to work with Charles Carillo recently, and I couldn't be happier! He is very knowledgeable, he took his time to educate me when I had questions and concerns. I am grateful to have Charles as my assigned account manager.
Thank you Charles
Alex Onyekachi profile picture
Alex Onyekachi
1 year ago
Janet Barto profile picture
Janet Barto
1 year ago
Charles was really great to work with. He listened and explained everything. He answered all my questions .
Paul Stanger profile picture
Paul Stanger
1 year ago
Working with Charles was a perfect experience. He and his team were really great throughout the process. Charles’ prompt communication and execution with his end of tasks was amazing. Super impressed with him.
Spencer McManes profile picture
Spencer McManes
1 year ago
Charles at Allied Payments was flexible and worked hard to get me online!
Chase Brendle profile picture
Chase Brendle
2 years ago
100% hands down the best merchant services provider for high-risk industries, in every category! We researched and contacted a list of the top 25 providers and after all was filtered down from even possible with our products, to competitive pricing, Allied stood out as the clear winner. In addition to that they have backed their promises with immediate human American support resources that are extremely qualified and professional. Allied was the fastest to get approval, including their in-house underwriting to filter out any website needs etc. They were the most competitive in price. They had the simplest application process. And their support hands-on assisted me in a full woo-commerce integration. This entire process took less than one day after approval and I had a direct phone number for any and all needs to be addressed. Stop here, call, and ask for Charles he was my guy and as someone who's sold merchant services, and has owned multiple businesses requiring over 10 independent platform integrations, this has been the most efficient and pleasant experience I've had yet!

 

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